NAPC 2001
June 26 - July 1 2001 Berkeley, California
Abstracts, Ja - Ju
(5/17/01)
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INVASIVE SPECIES, EXTINCTIONS, AND THE FOSSIL
RECORD
JABLONSKI, David, Dept. of Geophysical Sciences, University of Chicago,
Chicago, IL, USA; Kaustuv Roy, Section of Ecology, Behavior and Evolution,
Div. of Biology, University of California San Diego, La Jolla, CA, USA;
and James W. Valentine, Dept. of Integrative Biology, University of California,
Berkeley, CA, USA
Biotic interchanges and invasive species represent a
major threat to present-day biodiversity. The fossil record is rich in
biogeographic dynamics across a variety of scales and driving mechanisms,
from range shifts in response to climate change to extinction-mediated
biotic interchanges. E.g., understanding biogeographic responses to changing
climates is essential for predicting the consequences of regional and
global environmental change. Our data on the Pleistocene and modern range
limits of Californian marine bivalves show species that significantly
shifted their geographic ranges in response to Pleistocene glacial-interglacial
cycles were preferentially drawn from the large end of the provincial
body size-frequency distribution. This difference is not due to phylogenetic
effects, or differences among major ecological categories (life position,
trophic group, larval mode). The same size-selectivity can be seen for
invasive species of bivalves in present-day marine environments, despite
the different mechanism of range expansion. These results indicate that
range limits of large-bodied bivalve species are more volatile than small-bodied
ones, and that body size and its correlates need to be considered when
predicting the responses of marine communities to climate change, biotic
interchanges, and human-mediated invasions. At larger scales, interchanges
among regions tend to be asymmetrical, with recipient regions often suffering
greater pre-invasion extinction than donors. This strongly supports a
role for ecological incumbency, although interregional contrasts in physical
environmental changes cannot always be ruled out. However, after the K-T
mass extinction North America was subject to more intense invasion than
other regions despite its unexceptional (if severe) extinction. This response
implies a nonlinear relation between extinction and invasion intensities,
or simply a threshold above which the relation breaks down. This result
may have important implications for the persistence and recovery of local
biotas and intrerregional source-sink dynamics.
FISH STORIES: USING FOSSILS FOR FISHERIES MANAGEMENT
JACKSON, Jeremy B.C., Scripps Institution of Oceanography, University
of California, San Diego, CA, USA
Fossil time series can provide a baseline of the characteristic
variance of marine ecosystems prior to human disturbances and the sequence
of subsequent changes. However, fossil data alone can be misleading, and
archeological, historical, and ecological data are required to sort out
cause and effect. I present three examples of the application of paleontological
data to fisheries. Abundance of fish scales in annually varved, hypoxic
sediments of Santa Barbara Basin demonstrate enormous, cyclical variations
in anchovies and sardines over several thousand years due to regime shifts
in oceanogaphic conditions. Studies of the possible impacts of fishing
must incorporate this extreme natural variability. The second example
concerns mass mortality of Caribbean reef corals due to disease and overfishing.
Surveys of Pleistocene reef terraces and drilling of subtidal Holocene
reefs demonstrate great stability of coral community composition until
the 1970s. There is also paleontological and ecological evidence of unprecedented
replacement of formerly abundant, competitively dominant coral species
by more tolerant weedy species. However, the fossil record is so far silent
about the occurrence of disease and overfishing that set off the coral
decline. The final example concerns eutrophication of Chesapeake Bay.
Sediment accumulation, organic carbon, and pollen in cores demonstrate
massive increases in sedimentation following the advent of European agriculture
in the mid 18th century. Ratios of planktonic to benthic diatoms increase
and records of submerged aquatic vegetation decrease in tandem. However,
eutrophication and hypoxia did not occur for another 100 years when oysters
were extirpated by mechanical dredging. Formerly abundant oysters had
filtered the equivalent water of the entire Bay every few days and suppressed
the build-up of phytoplankon. Thus, eutrophication and hypoxia were due
more to loss of "top-down" control of phytoplankton by oysters
than to "bottom-up" nutrificationwith profound implications
for ecosystem restoration and management.
EVOLUTIONARY COMPUTING WITH SWARMS
JACOB, Christian, Dept. of Computer Science, University of Calgary, AB,
Canada
Swarm intelligence systems are attracting more and more
attention as convenient models to investigate patterns of emergent behaviors.
Swarm systems provide object-based, parallel models that evolve behavior
patterns from massively parallel, but local interactions of, usually simple,
agents. An ant colony is a typical example of such a swarm system. Each
ant follows a rather restricted set of rules through which it interacts
with its environment. However, an ant colony, as a collection of thousands
of ants, acts like a multicellular organism of its own, a super-organism
that develops, evolves, and derives its emergent behavior from an intricate
and massively-parallel set of interactions among the individual members
of the colony.
Apart from interaction patterns among social insects
(ants, termites, bees, etc.), similar principles of self-organization,
emergent complexity, cooperation and competition arise in gene regulation
networks, in the formation of cell clusters during development, in signal
propagation within neural networks, in ecosystems, in co-evolutionary
scenarios, and in any social and economic system.
Evolution is the key designer of swarm behaviors in nature,
as, for example, many studies on social insects have shown. Therefore,
it is desirable to combine evolutionary models with swarm systems, which
will allow for more realistic investigations of the interconnections between
principles of evolution and massively parallel, decentralized systems.
We will present a framework for performing experiments
in evolutionary computing, as well as swarm intelligence systems. The
combination of both approaches into evolutionary swarm systems poses major
challenges (both from a computational and a conceptual point of view).
We will outline the difficulties and discuss simple examples of evolutionary
swarms, in particular in the context of social insects and plant ecosystems.
OPERATIONAL AND BIOLOGICAL REASONS WHY
MOLECULAR RATES ARE EXPECTED TO VARY
JACOBS, David K., Dept. of Organismic Biology, Ecology, and Evolution,
University of California, Los Angeles, CA, USA
Following the lead of Linus Pauling and Matsutoshi Nei
many have employed an assumption of a molecular clock combined with statistical
methods to extrapolate from known tie points in the fossil record to infer
divergence times. However, there are aspects of taxon sampling that influence
sequence alignment and phylogeny reconstructionsteps that are required
to calculate rates. Such imbalances between well samples clades used to
infer rates and less well sampled outgroups should lead to systematic
biases most frequently resulting in erroneously large basal branch lengths.
In addition to such operational issues, recent work relating genome size
to deletion processes that eliminate DNA suggest that genome size and
molecular rate covary. Other aspects of genome structure and process such,
as GC content, gene duplication, inversion frequency and DNA repair mechanisms
would also be expected a priori to influence rates of molecular
change in different lineages. All of the above should influence the calculation
of rates and divergence times based on suites of proteinsthe approach
that has recently been popularized for calculations of divergence times
of various metazoan groups. However, protein rates are summations over
broad suites of amino-acid sites that are each subject to a different
degree of selective constraint. This is a far cry from the molecular clock
processes suggested by Nei based on sets of neutral alleles. However,
even sequences that are presumed to be selectively neutral are seen to
vary by a factor of two in intraspecific phylogeographic trees. Apparently,
aspects of local metapopulation structure can also strongly influence
molecular rates in "ideal" unsaturated data. Given the above
arguments calculations of divergence times should be treated with circumspection
by workers interested in reconstructing the history of life.
TESTING HETEROCHRONY IN THECIDEIDE BRACHIOPODS
BY INTEGRATING PHYLOGENETIC, SCLEROCHRONOLOGIC AND MORPHOMETRIC DATA
JAECKS, Glenn S., Sandra J. Carlson, and Howard J. Spero, Dept. of Geology,
University of California, Davis, CA, USA
Thecideida (Triassic-Recent) is an order of small-bodied,
cemented, tropical to subtropical cave-dwelling brachiopods that have
an unique brachidial (dorsal median septum) morphology. Thecideide brachiopods
have been considered a paedomorphic taxon because of their relatively
small body size and simple, circular lophophore. Phylogenetic results
of 48 ingroup taxa previously presented support thecideide monophyly,
and suggest a complex mosaic of paedomorphic and peramorphic patterns
within thecideide evolution. Oxygen stable isotope sclerochronology of
extant genera, Thecidellina and Lacazella, suggests that
thecideides have much shorter longevities (13 years) than possible
sister taxa, including terebratulides, strophomenides (10 or more years)
and spire-bearers. This suggests that a strong component of progenesis
is likely responsible for their small size. Thecideide median septum morphology
is highly varied, from simple, blade-like structures to broad, three-dimensional
branching structures; lateral septa may also be present. I describe median
septum development and evolution using geometric morphometric analysis
of median septum outline landmarks. I am testing apparent patterns of
peramorphosis in median septum evolution by combining sclerochronological
with morphometric data to produce calibrated ontogenetic trajectories,
all evaluated in a phylogenetic context. One such peramorphic pattern
appears within a clade including the extant Thecidellina and extinct
Moorellina: three Moorellina species as adults display a
pair of posterior processes normal to the median septum, whereas Thecidellina
has these features as a juvenile only. As Thecidellina is derived
relative to Moorellina, this may be a case of peramorphosis. Other
possible cases of peramorphosis appear within the other extant clade including
Lacazella and Pajaudina, in which multiple median septum
ramuli are derived several times. Ramuli are associated with folds in
the lophophore that increase surface area, and their evolution may be
indicative of either increased size or extended development, or both.
THE ORIGINS AND EVOLUTION OF THE NORTH AMERICAN
GRASSLAND BIOME: THE STORY FROM THE HOOFED MAMMALS
JANIS, Christine M., Dept. of Ecology and Evolutionary Biology, Brown
University, Providence, RI, USA; John Damuth, Dept. of Ecology, Evolution,
and Marine Biology, University of California, Santa Barbara, CA, USA;
and Jessica M. Theodor, Dept. of Organismic Biology, Ecology and Evolution,
University of California, Los Angeles, CA, USA
The North American grassland biome first appeared around
18 Ma in the mid Miocene. The familiar story of the Neogene evolution
of this biome is of the replacement of browsing (leaf-eating) ungulates
(hoofed mammals) by more derived grazing ungulates. However, new data
show a more complicated pattern of faunal succession. There was a maximum
taxonomic diversity of ungulates at 1614 Ma, including a large number
of grazers, and the subsequent decline in overall diversity was largely
due to extinctions among the browsers, with little corresponding increase
in the numbers of grazers. Additionally, the mid Miocene faunas (1812
Ma) contained a much greater number of browsers than any comparable present-day
habitat. These non-analogous Miocene grassland faunas may reflect greater
levels of primary productivity than known today, possibly as the result
of higher levels of atmospheric carbon dioxide. The proposed difference
in vegetational productivity also may explain why horses radiated as the
main grazers in North America, in contrast to the radiation of antelope
in the Plio-Pleistocene African grasslands.
A SCRATCH CIRCLE ORIGIN FOR THE MEDUSOID FOSSIL
KULLINGIA
JENSEN, Sören, and Mary L. Droser, Dept. of Earth Sciences, University
of California, Riverside, CA, USA; and James G. Gehling, South Australian
Museum, Adelaide, Australia
Scratch circles are sets of concentric grooves that were
cut in sand or mud by a tethered object rotated by currents or waves.
There are scattered reports of scratch circles from the Proterozoic to
the Recent. However, the occurrences of subaqueous scratch circles have
been underestimated because casts of certain scratch circles have entered
the literature as cnidarian medusoids.
The most compelling example is Kullingia, a supposed
medusoid with sharp and regularly developed concentric ridges. The type
species, Kullingia concentrica, from the Lower Cambrian of northern
Sweden, possesses several features that point to its actual origin. A
few specimens preserve impressions of a segmented tubular organism centered
on and conterminous with the disc. In several specimens grooves are present
on more than one closely spaced level of laminated sediment. There also
typically is a distinct central depression, which represents the position
at which the organism was attached. That Kullingia from northern
Sweden is a scratch circle was first suggested by Frank Stodt (1987; thesis,
Marburg). This interpretation applies also to Kullingia concentrica
from the Lower Cambrian of the Ukraine, and to purported chondrophorines
from the Lower Cambrian Chapel Island Formation, Newfoundland, reported
as Kullingia delicata. Kullingia occurs in close association
with Ediacara-type fronds in the Lower Cambrian Uratanna Formation, South
Australia. It is likely that these fronds were responsible for the scratch
circles.
The Kullingia-type scratch circles discussed above
all occur in basal Lower Cambrian strata deposited in storm influenced
marine settings. This may represent the stratigraphic coincidence of the
evolution of attached tubular or frond-like organims and low levels of
bioturbation that increased likelihood of preservation. A scratch circle
origin probably should be considered also for certain other simple medusoids
from the terminal Proterozoic and Cambrian, such as structures described
as Nimbia occlusa from the Upper Cambrian of Ireland.
LATEST CHANGHSINGIAN FOSSILS AROUND THE YUNKAI VOLCANOS
OF SOUTH CHINA
JIN, Yugan, Changqun Cao, and Shuzhong Shen, Nanjing Institute of Palaeontology
and Geology, Chinese Academy of Sciences, Nanjing, China
Over last two decades, selecting the global stratotype
for the Permian-Triassic boundary lead to establish a set of extensively
studied candidate sections. These sections provided a great deal of information
with regard to the end-Permian Mass Extinction. However, most of them
consist of carbonates of slope facies and thus, are often condensed in
thickness and contain rare authentic shallow mariner fossils. We report
here a Permian-Triassic boundary section distinct from the others in South
China. As much as 400 m thick, the Talung Formation of late Changhsingian
accumulated in the west of the Yunkai land, of which repeated effusion
of volcanos provided a huge amount of pyroclastics. The volcanic ash from
its base and top was dated as 252.4 ± 0.2 and 251.6 ± 0.1 Ma
respectively and thus, this unit represents deposition less than 1 m.y.
The Talung Formation consists of three parts: (1) The lower, 65 m in thickness,
belongs to the Clarkina changxingensis Zone of late Changhsingian
and is composed of chert and cherty shale of basinal facies. (2) The middle
comprises 350 m thick cyclic beds of sandstone, siltstone with coal seams.
(3) The upper belongs to the Clarkina yini Zone of latest Changhsingian
and comprises 15 m thick lime mudstone and packstone. The topmost limestone
is overlain by tuffaceous siltstone without other fossils but abundant
bivalves Claraia. We interpret the facies change between the lower
and middle as an abrupt regression, and that between the middle and upper
as a rapid transgression. The regression-transgression cycle can be correlated
to that at the very top of the Changhsingian at the Meishan Section disregarding
a great disparity in thickness. Plant and marine fossils remain highly
diverse from the uppermost Changhsingian. Calcareous sponges, framebuilders
of Changhsingian reefs and a bunch of pro-reef brachiopods occur in the
topmost limestone as well. These facts show that the latest Changhsingian
regression-transgression had not lead to faunal and floral overturn.
HIERARCHY THEORY, EVOLUTIONARY PROCESSES, AND
REEF ECOSYSTEMSTHE GLUE THAT BINDS
JOHNSON, Claudia C., Dept. of Geological Sciences, Indiana University,
Bloomington, IN, USA
In an attempt to further an understanding of evolutionary
processes, genealogical and ecological hierarchies are recognized in macroevolutionary
studies. The genealogical line is concerned with the activity of reproduction
and the ecological line with matter-energy transfer. Cretaceous reefs
from Tethys are used to test whether reproduction and matter-energy transfer
within a reef ecosystem can be discerned from the fossil record in order
to unravel large-scale evolutionary processes.
Scleractinian corals and rudist bivalves identify the
reproductive process (flow of genetic information), for species are components
of only the genealogical hierarchy. Trophic levels and guild structures
provide data for testing the persistence of matter-energy transfer and
the ecological hierarchy. As predicted by theory, mass extinctions disrupted
both the genealogical and ecological lines. Data indicate that the genealogical
hierarchy was permanently altered, but the ecological line was only temporarily
disrupted during the terminal Cretaceous extinction event. After the K/T
event, the ecological line persisted.
Although the genealogical line changed numerous times
through the Phanerozoic, the persistence of the ecological line across
all mass extinction boundaries allows scientists to recognize the coherent
structure of reefs, for it is the process of matter-energy transfer that
remains intact and identifiable within and across mass extinction boundaries.
If data from the geological record were used to evaluate
evolutionary processes, we might surmise that the preservation of trophic
groups and guild structures would be more valuable than the preservation
of a single species if the health of our present and future reefs were
endangered.
Analysis of the reef ecosystem in the context of a theoretical
framework involving distinct hierarchies allows an understanding of the
persistence of the reef ecosystem through the Phanerozoic, and provides
a framework for evaluating the health of future ecosystems.
MORPHOTYPING THE CRETACEOUS AND PALEOGENE LEAF
FLORAS OF THE ROCKY MOUNTAIN REGION
JOHNSON, Kirk R., Dept. of Earth and Space Sciences, Denver Museum of
Nature and Science, Denver, CO, USA; Peter Wilf, Museum of Paleontology,
University of Michigan, Ann Arbor, MI, USA; and Scott L. Wing, Dept. of
Paleobiology, National Museum of Natural History, Smithsonian Institution,
Washington, DC, USA
Extensive fossiliferous outcrops of Cretaceous and Paleogene
rocks in the Rocky Mountain region have yielded abundant and diverse plant
megafossils, especially leaves, for more than a century. Unfortunately,
much of the early work on these floras utilized faulty taxonomy that generated
highly erroneous species lists populated by extant genera. The desire
to utilize this record to assess paleovegetation, paleoclimate, diversity
trends, and extinction events has led to the development of a morphotype
method that allows for rapid and reproducible assessment of megafloras
in advance of their phylogenetic assessment. This method assigns alphanumeric
identifiers (e.g., HC105) to "holomorphotype" specimens that
typify morphological categories based on their leaf architecture. Application
of this methodology to very large samples (103 to 104
specimens) collected and/or censused from discrete quarries in
known sedimentological facies allows for quantitative assessment of floral
diversity, relative abundance structure, stratigraphic range, turnover,
extinction, and leaf physiognomy. To date we have morphotyped large collections
from the Hell Creek, Laramie, Fort Union, Denver, Dawson, Wasatch,
Willwood, Green River, and Wind River Formations of Montana, the Dakotas,
Colorado, and Wyoming. This internally consistent database has allowed
us to document biogeographical variation, climate change, and patterns
of plant evolution and extinction before and after the Cretaceous/Paleogene
and Paleocene/Eocene boundaries.
HISTORY OF THE DOMINICAN REPUBLIC PROJECT
JUNG, Peter, Naturhistorisches Museum Basel, Basel, Switzerland
It has long been known that the northern Dominican Republic
is rich in excellently preserved Neogene molluscan faunas. On the other
hand, the geological map of that area looked like a white spot. For this
reason, John Saunders, then micropaleontologist at the Basel Natural History
Museum, and the present author sat together to plan a project. The main
aim was to measure sections and to collect faunas from as many horizons
as possible. At the same time it was thought essential to coordinate micropaleontological
and macropaleontological evidence. The fieldwork was financed by the Swiss
National Science Foundation and took place in 1978, 1979, and 1980 during
a total period of three months. The first publication of the project dealing
with field surveys, lithology, environment, and age appeared in 1986,
and since then 20 monographs have been published in Bulletins of American
Paleontology. Additional monographs are expected.
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